I understood what you were saying. The emoticon was just my way of saying I'm baffled. I wish I could be of more help. I have a setup very similar to yours and I'm having no problems with Flex Pitch, so I'm leaning towards the problem being internal to your setup.
I did have a session once that for some reason (maybe not enough RAM at the time) went corrupt and I had to create a copy of the session and do some work to get back to where I was.
The only other things that come to mind are:
1. A corrupt session.
2. Corrupt software. Maybe a fresh install of Logic.
3. Sample rate is too high for your computer to handle.
I think Flex Pitch is too important a feature for Apple to just ignore a critical problem of software development, so I'm fairly certain it's not in the code.
Maybe go to the Logic forum and see if anyone else is having similar issues.
https://discussions.apple.com/commun...ions/logic_pro